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SNP dataset for 148 Kenyan, African and Eurasian honey bees (part 10)

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DataONE2017-08-30 更新2024-06-26 收录
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This dataset contains the 13+ million SNPs that were detected between 148 Kenyan, African and Eurasian honey bees using FreeBayes and that passed quality filtering. Details for SNP processing, sample labels and quality control is provided in the paper and its supplementary information. The original 148_honeybees.vcf.gz input file has been split into fourteen numbered parts (0 to 13). After downloading all parts, they can be joined to recreate the original file using the follwing UNIX command: cat 148_honeybees.vcf.gz.{0..13}.split > 148_honeybees.vcf.gz The VCF file can then be unzipped using the UNIX command: gunzip 148_honeybees.vcf.gz

本数据集包含通过FreeBayes软件检测得到且通过质量过滤的1300余万个单核苷酸多态性位点(Single Nucleotide Polymorphisms, SNPs),这些位点来自148只采集自肯尼亚、非洲及欧亚大陆的蜜蜂。单核苷酸多态性位点的处理流程、样本标签及质量控制细节详见相关论文及其补充材料。 原始输入文件148_honeybees.vcf.gz已被拆分为14个带编号的分块(编号0至13)。下载所有分块后,可通过以下UNIX命令拼接还原原始文件:cat 148_honeybees.vcf.gz.{0..13}.split > 148_honeybees.vcf.gz 可通过UNIX命令gunzip 148_honeybees.vcf.gz对该变体调用格式(Variant Call Format, VCF)文件进行解压缩。
创建时间:
2017-08-30
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