Additional file 2 of Physiological and comparative transcriptome analyses reveal the mechanisms underlying waterlogging tolerance in a rapeseed anthocyanin-more mutant

Additional file 2: Table S1. List of DEGs detected in the WT ZS11after the waterlogging treatment. Table S2. List of DEGs detected in the am mutant after the waterlogging treatment. Table S3. Differential expression of subclusters 1–5 in the am mutant. Table S4. Differential expression of subclusters 1–6 in the WT. Table S5. All the up- and downregulated DEGs with GO annotations in the am mutant. Table S6. All the up- and downregulated DEGs with GO annotations in the WT. Table S7. KEGG pathway enrichment of the DEGs in the WT. Table S8. KEGG pathway enrichment of the DEGs in the am mutant. Table S9. The DEG enrichment in the phenylalanine biosynthetic and metabolic pathways. Table S10. A list of differentially expressed TFs in the WT. Table S11. A list of differentially expressed TFs in the am mutant. Table S12. The DEG enrichment in plant hormone signal transduction pathways. Table S13. New transcript predictions as assessed by RNA-seq. Table S14. Primers used for qPCR validation of the selected DEGs.

附加文件2：表S1. 渍水处理后野生型（Wild Type）ZS11中检测到的差异表达基因（Differentially Expressed Genes, DEGs）列表。表S2. 渍水处理后am突变体中检测到的差异表达基因列表。表S3. am突变体中亚簇1-5的差异表达情况。表S4. 野生型ZS11中亚簇1-6的差异表达情况。表S5. am突变体中所有带有GO（Gene Ontology）注释的上调与下调差异表达基因。表S6. 野生型ZS11中所有带有GO注释的上调与下调差异表达基因。表S7. 野生型ZS11中差异表达基因的KEGG（Kyoto Encyclopedia of Genes and Genomes）通路富集结果。表S8. am突变体中差异表达基因的KEGG通路富集结果。表S9. 苯丙氨酸生物合成与代谢通路中的差异表达基因富集情况。表S10. 野生型ZS11中差异表达转录因子（Transcription Factors, TFs）列表。表S11. am突变体中差异表达转录因子列表。表S12. 植物激素信号转导通路中的差异表达基因富集情况。表S13. 通过RNA测序（RNA-seq）评估得到的新转录本预测结果。表S14. 用于所选差异表达基因实时定量PCR（Quantitative Real-time PCR, qPCR）验证的引物列表。