Data from: Robust inference on large-scale species habitat use with interview data: the status of jaguars outside protected areas in Central America

Jaguar Model Main CodeR code to build models of jaguar habitat use, with and without false positives, using JAGSJaguarModel_MainCode_forDryad.RCross-validation Main CodeR code for two cross-validation methods used for our data: one novel method that seeks to replicate the observation process, leading to percent accuracy & probabilities of omission and commission, and the other method (based on Hooten & Hobbs 2015 and Miller & Grant 2015) that tests whether deviance is reduced via inclusion of hierarchical structure. Both methods implemented in JAGS.CrossVal_MainCode_forDryad.RCorridor ID.csv with Corridor IDCorridor_Max6_FP.csvEffort.csv with Effort data (% of year spent in sampling unit)Field Season ID.csv with Field Season IDFieldSeason.csvJaguar Detection HistoryData re: whether or not a jaguar or jaguar sign had been seen by the interviewee in the given sampling unit. Sampling units are rows, interview replicates are columns.Jaguar_Max6_FP.csvMore Than FourData corresponding to whether or not >4 interviews were conducted in the unit (1/0)MoreThanFour_v3.csvSite CovariatesAll site covariates considered in the analysis. Summarized at sampling unit level.SiteCovariates.csv

### 美洲豹模型主代码
本代码为R脚本，用于构建美洲豹栖息地利用模型，可分别设置包含或排除假阳性（false positives）场景，基于JAGS（Just Another Gibbs Sampler）实现。对应文件为：JaguarModel_MainCode_forDryad.R

### 交叉验证主代码
本代码为R脚本，用于实现本研究数据的两种交叉验证（cross-validation）方法：其一为原创方法，旨在复现观测过程，可输出准确率百分比、漏检概率与误判概率；其二基于Hooten与Hobbs 2015年、Miller与Grant 2015年的研究成果，用于检验引入分层结构（hierarchical structure）是否可降低偏差（deviance）。两种方法均通过JAGS实现。对应文件为：CrossVal_MainCode_forDryad.R

### 廊道ID数据集
包含廊道标识信息，对应文件为：Corridor_Max6_FP.csv

### 采样投入数据集
记录各采样单元的年内采样时长占比，对应文件为：Effort.csv

### 野外季ID数据集
包含野外季标识信息，对应文件为：FieldSeason.csv

### 美洲豹探测历史数据集
记录受访者在指定采样单元内是否观测到美洲豹或其活动痕迹，其中采样单元以行表示，访谈复本以列表示。对应文件为：Jaguar_Max6_FP.csv

### 超四次访谈数据集
标记各采样单元是否开展了4次以上访谈（开展记为1，未开展记为0），对应文件为：MoreThanFour_v3.csv

### 样地协变量数据集
包含本分析中用到的全部样地协变量，已按采样单元进行汇总整理。对应文件为：SiteCovariates.csv