Data from Laumer et al 2015 Current Biology http://dx.doi.org/10.1016/j.cub.2015.06.068

The two major alignments that we based our analyses off of for this paper are contained within this tarball, as Platyzoa_backup.tar.gz\Platyzoa_backup.tar\Platyzoa_backup\ExaML\platyzoa402.phylip and Platyzoa_backup.tar.gz\Platyzoa_backup.tar\Platyzoa_backup\ExaML\pz402_BMGE\platyzoa402_BMGE.phylip Representing the 402 gene matrix constructed with MARE, untrimmed and trimmed by BMGE, respectively. The PartitionFinder analysis is held in Platyzoa_backup.tar.gz\Platyzoa_backup.tar\Platyzoa_backup\pz402, with ExaML analyses from this partitioning scheme held in Platyzoa_backup.tar.gz\Platyzoa_backup.tar\Platyzoa_backup\ExaML\pz402_part, with the Newick tree corresponding to Figure 1A in "pz402_part_bsbest.tre". You will also find a few analyses that didn't make it into the paper (e.g. a 761 gene matrix, an ASTRAL gene tree analysis). The 402 orthologs used to make the supermatrix presented in the paper are named in "OG6_parts.txt_reduced" under the pz402 directory. Individual unaligned OMA orthogroups are stored in a separate tarball, OrthologousGroupsFasta.tar.gz. Newick trees used to derive Figures 1B and 1C are uploaded separately here outside the tarball.