BioSample dataset for ontology mapping evaluation
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下载链接：
https://zenodo.org/record/14881141
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资源简介：
Datasets for the evaluation of automatic curation of BioSample using Large Language Models (LLMs).
Files
biosample_cellosaurus_mapping_gold_standard.tsvThe gold-standard dataset for the cell line ontology mapping task. This was manually created by the authors.
biosample_cellosaurus_mapping_testset.jsonThe BioSample dataset used for the cell line ontology mapping task. This was collected using the EBI BioSamples API.
biosample_cellosaurus_mapping_result_llm_assisted.tsvThe result of the cell line ontology mapping of the test dataset by the LLM-assisted pipeline.
biosample_cellosaurus_mapping_result_metasra.tsvThe result of the cell line ontology mapping of the test dataset by directly using the MetaSRA pipeline.
biosample_gene_extraction_testset.jsonThe BioSample dataset used for the gene name extraction task. This was collected using the EBI BioSamples API.
biosample_gene_extraction_result.tsv The result of the gene name extraction from the test dataset by the LLM-assisted pipeline.
Licenses
biosample_cellosaurus_mapping_gold_standard.tsv is licensed under CC BY 4.0.
All other files are licensed under CC0.
创建时间：
2025-02-24
