Greenish Warbler VCF files: invariant and SNPs

This folder contains 31 files in the VCF format. Each contains genotypic information for a single chromosome (or chromosome fragment) for all individuals in the two GBS (genotype by sequencing) plates in the study. The files have names corresponding to "GW_Lane5plusLiz.GWref.genotypes.allSites.chr*.infoSites.vcf"; the * represents the chromosome name. All sites, both variant and invariant, where there was a total of more than 10 sequencing reads among all individuals were included. The chromosomes refer to those in the Zebra Finch assembly (version 3.2.4; Warren et al. 2010). For details of how these VCF files were produced and how they were then used, see the associated paper (Irwin et al., in review, Molecular Ecology) and this file in this same Dryad package: "GW_islands_of_diff_processing_scripts.txt"

本文件夹包含31个VCF（Variant Call Format）格式文件。每个文件存储了本研究中两块GBS（genotype by sequencing，测序分型）板内所有个体的单条染色体（或染色体片段）的基因型信息。这些文件的命名格式为"GW_Lane5plusLiz.GWref.genotypes.allSites.chr*.infoSites.vcf"，其中星号*代表染色体名称。本数据集纳入了所有个体间总测序读段数超过10的位点，无论该位点是否存在变异。此处所用的染色体序列均源自斑胸草雀参考基因组组装版本3.2.4（Warren等，2010年）。若需了解这些VCF文件的生成与后续使用细节，请参阅相关论文（Irwin等，审稿中，《Molecular Ecology》）以及本Dryad数据包中的"GW_islands_of_diff_processing_scripts.txt"文件。