Microbial adaptations underpin metabolic convergence across global shale basins

Phylogenetic trees for the manuscript (in prep) titled "Microbial adaptations underpin metabolic convergence across global shale basins" by Amundson et al. Description of files: rhodanase_MAGs_gtdbtk.bac120.rooted.tree: Phylogenetic tree of MAGs encoding rhodanase genes, generated using GTDB-tk. Tree is also shown in Figure S9. dsrAB_phsA_MAGs_gtdbtk.bac120.rooted.tree: Phylogenetic tree of MAGs encoding dsrB genes, generated using GTDB-tk. Tree is also shown in Figure S9. dsrB_RAxML_tree_bipartitionsBranchLabels: RAxML tree of all dissimilatory sulfite reductase (dsrB) genes encoded in MAGs, in addition to reference reductive dsrB genes. Tree is also shown in Figure S11. methyNO_RAxML_bipartitionsBranchLabels: RAxML tree of all methyl-N and methy-O methyltransferase genes encoded in MAGs, in addition to reference methyltransferase genes. Tree is also shown in Figure S12. methylS_RAxML_bipartitionsBranchLabels: RAxML tree of all methyl-S methyltransferase genes encoded in MAGs, in addition to reference methyltransferase genes. Tree is also shown in Figure S13.