The emergence of metabolisms through Earth history and implications for biospheric evolution

Associated material for the PTRSB manuscript, entitled 'The emergence of metabolisms through Earth history and implications for biospheric evolution' from Moody et al. 2025.File structure:Dated_Nodes: This includes the merged dating results with the reconciliationsDating_Results: Results from the molecular clock analysesGenes_Taxonomy_Tree: This includes the alignments, concatenation and species tree files, along with ID files.Metabolic_completeness_over_time: This includes the anvio estimations for the internal and external nodes across the species tree, line graphs for each of the metabolic modules over time, and also all the data used to generate them.Timeslice_KEGGs: This includes the different time-slice metabolisms inferred via anvio for figure 1A.Transfers: This includes the information used for the transfer and duplication analyses.<br>

本数据集为Moody等人2025年发表的PTRSB手稿配套辅助材料，手稿题为《地球历史中的代谢组涌现及其对生物圈演化的启示》（The emergence of metabolisms through Earth history and implications for biospheric evolution）。
文件架构如下：
Dated_Nodes：收录经校正整合的定年结果
Dating_Results：分子钟分析所得结果
Genes_Taxonomy_Tree：收录序列联配文件、拼接序列文件与物种树文件，以及配套ID文件
Metabolic_completeness_over_time：收录针对物种树内外节点的anvio估算结果、各代谢模块随时间变化的折线图，以及生成上述折线图所用的全部原始数据
Timeslice_KEGGs：收录通过anvio推断得到的、用于绘制图1A的不同时间切片代谢组数据
Transfers：收录用于基因转移与基因重复分析的相关信息