Organised genomic HIV and Pseudomonas sequence data

HivDB is a proof of concept display of a pipeline tool designed to collect and organize genomic data in order to optimize down stream analyses. Utilizing genbank files, genomes are parsed into their respective genes and saved with any appropriate meta data in FASTA formatted files. The resulting files allow the sequence data to be efficiently queried based on several parameters including country of isoloation, date, and accession number. This public RESTful webservice exposes the results of the pipeline on public HIV sequence data from NCBI.

These are the source GenBank files used to build our site.

HivDB 是一项概念验证型管道工具的展示，旨在收集和组织基因组数据，以优化下游分析。通过解析 GenBank 文件，基因组被分解为其相应的基因，并以带有任何适当元数据的 FASTA 格式文件保存。这些生成的文件允许基于多个参数高效查询序列数据，包括分离国、日期和访问号。此公共 RESTful Web 服务公开了基于 NCBI 公共 HIV 序列数据的管道结果。以下是我们构建网站所使用的源 GenBank 文件。