Additional file 3 of Gene-specific patterns of expression variation across organs and species

Table S2–S7. Spreadsheet with multiple tables, from S2 to S7. Table S2. List of genome assemblies and annotation files used in the Barbosa-Morais et al. study. Table S3. List of 6283 protein-coding orthologs in the seven species studied here. Table S4. Several attributes for the 6283 orthologs. This table includes for each of the 6283 orthologs (rows), the following attributes (as columns): col 1: human gene ID (Ensembl), col 2: absolute sum of squares across organs, col 3: absolute sum of squares across species, col 4: absolute residual variation, col 5: proportion of variation across organs, col 6: proportion of variation across species, col 7: category assigned based on the proportions of variation across organs and species (see “Methods” for details), col 8: dynamic range, col 9: constrained class based on dynamic range. The final gene sets can be obtained by requiring the value in col 9 to be “unconstrained”. Table S5. List of genes identified by projection score. Table S6. List of the mouse ENCODE ChIP-seq datasets used here. Table S7. List of GTEx sample IDs used in the variance decomposition. (XLSX 777 kb)

表S2至S7：涵盖S2至S7的多表格电子表格文件。
表S2：Barbosa-Morais等人研究中使用的基因组组装及注释文件列表。
表S3：本研究所涉及7个物种的6283个蛋白质编码同源基因列表。
表S4：6283个同源基因的多项属性信息。该表格以行代表6283个同源基因，各列包含如下属性：第1列：人类基因ID（Ensembl）；第2列：跨器官绝对平方和；第3列：跨物种绝对平方和；第4列：绝对残差变异；第5列：器官间变异占比；第6列：物种间变异占比；第7列：基于器官与物种间变异占比分配的类别（详细说明参见“方法”部分）；第8列：动态范围；第9列：基于动态范围划分的约束类别。最终基因集可通过筛选第9列取值为"unconstrained（无约束）"的条目获得。
表S5：通过投影得分鉴定得到的基因列表。
表S6：本研究使用的小鼠ENCODE（Encyclopedia of DNA Elements）ChIP-seq（染色质免疫共沉淀测序）数据集列表。
表S7：用于变异分解分析的GTEx（Genotype-Tissue Expression，基因型-组织表达）样本ID列表。（XLSX格式，777 KB）