Additional file 2 of Integrative profiling of Epstein–Barr virus transcriptome using a multiplatform approach

Additional file 2. TSSs of EBV. TSSs were detected using the LoRTIA software. The -150–0 nt region upstream from the TSS was analyzed for GC, CAAT and TATA boxes. Distances from the TSS are given in nucleotides. The ±10 nts region of the TSS was also retrieved for sequence analysis. The TSS positions from previous CAGE-Seq [26] and PacBio [26] analyses were matched with our results. The sample number in which a given TSS was detected is shown. TSS coordinates are according to the genome of strain Akata (NCBI accession: KC207813.1).