BED files containing Transposable Element (TE) annotations for 33 Drosophila melanogaster genomes

BED files containing Transposable Element (TE) annotations for 33 Drosophila melanogaster genomes. 32 of these genomes belong to strains from natural pulations and the remaining annotation (ISO1) belongs to the reference genome (dmel6). TE were annotated using the REPET package (v.2.5) (Flutre et al. 2011; Hoede et al. 2014; Quesneville et al. 2005) witn a Manually Curated Transposable Elements (MCTE) library from Drosophila melanogaster. NOTE: Coordinates in the bed files refers to the strain’s genome, not the reference.