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Benchmarks of the 2-step pipeline on NA12878 whole genome (Basic protocol 1).

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https://figshare.com/articles/dataset/_Benchmarks_of_the_2_step_pipeline_on_NA12878_whole_genome_Basic_protocol_1_/1486205
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Similar as with exome data, the combined execution of the preparation pipeline in elPrep is much faster than executing the individual steps one by one, which is the only option with Picard. elPrep executes Basic protocol 1 about 2.5 times faster than Picard. Benchmarks of the 2-step pipeline on NA12878 whole genome (Basic protocol 1).
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2015-07-16
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