Additional file 2 of Prediction of evolutionary constraint by genomic annotations improves functional prioritization of genomic variants in maize

Additional file 2: Table S1. Functional information about gene models in the maize reference genome: experimental gene annotations and percentile for SIFT conservation and phylogenetic nucleotide conservation (PNC). Table S2. Number of genes prioritized by SIFT conservation or phylogenetic nucleotide conservation (PNC), in each CornCyc pathway. Table S3. Prioritization of nonsynonymous SNPs by SIFT conservation or phylogenetic nucleotide conservation (PNC): number of selected SNPs in hybrid panels and expected number of putative deleterious mutations per inbred line based on minor allele frequency (MAF) in reference panel.

附加文件2：表S1。玉米参考基因组中基因模型的功能信息：实验性基因注释，以及SIFT（Sorting Intolerant From Tolerant）保守性与系统发育核苷酸保守性（PNC）的百分位数。表S2。各CornCyc通路中经SIFT保守性或系统发育核苷酸保守性（PNC）优先排序的基因数量。表S3。基于SIFT保守性或系统发育核苷酸保守性（PNC）的非同义单核苷酸多态性（nonsynonymous SNPs）优先排序：杂交群体中筛选获得的SNP数量，以及基于参考群体次要等位基因频率（MAF）计算得到的每个自交系的潜在有害突变预期数量。