Files for Main Figure 5

Files for generating main figure 5 1. intergenic_TE_gene_5kb: Correlation results between intergenic TEs and +/- 5kb genes 2. TCGA_COAD_four_endpoint_survival: Survival data in four endpoints for TCGA-COAD patients 3: TCGA_COAD_gene: Gene TPM expression for TCGA-COAD patients 4: trinucleotide_mutational_profile: Summary of mutational profile in trinucleotide context in TCGA-COAD patients 5. Sensing_gene_TE_cor_GSVA_lasTEq: Correlation results between DNA-RNA sensing genes and TE quantified by lasTEq 6. Sensing_gene_TE_cor_GSVA_telescope: Correlation results between DNA-RNA sensing genes and TE quantified by telescope 7. GSVA_TCGA_COAD_sensing_gene: GSVA scores calculated for DNA-RNA sensing genes 8. 3_UTR: locations of 3'UTR of genes 9. 5_UTR: locations of 5'UTR of genes 10: TCGA_COAD_TE_exp_lasTEq: TE TPM expression of full TCGA-COAD cohort using lasTEq 11. Differently_measured_TEs: TEs greatly differently measured by lasTEq and Telescope

用于生成主图5的数据集文件如下：
1. intergenic_TE_gene_5kb：基因间区转座因子（Transposable Element, TE）与上下游±5kb区域基因的关联分析结果
2. TCGA_COAD_four_endpoint_survival：TCGA-COAD患者的四终点生存数据
3. TCGA_COAD_gene：TCGA-COAD患者的基因TPM表达量数据
4. trinucleotide_mutational_profile：TCGA-COAD患者三核苷酸突变背景下的突变谱汇总数据
5. Sensing_gene_TE_cor_GSVA_lasTEq：通过lasTEq定量的转座因子与DNA-RNA感知基因的GSVA关联分析结果
6. Sensing_gene_TE_cor_GSVA_telescope：通过telescope定量的转座因子与DNA-RNA感知基因的GSVA关联分析结果
7. GSVA_TCGA_COAD_sensing_gene：TCGA-COAD患者DNA-RNA感知基因的GSVA评分数据
8. 3_UTR：基因3'非翻译区（3' Untranslated Region, 3'UTR）的位置信息
9. 5_UTR：基因5'非翻译区（5' Untranslated Region, 5'UTR）的位置信息
10. TCGA_COAD_TE_exp_lasTEq：采用lasTEq工具定量的全TCGA-COAD队列的转座因子TPM表达数据
11. Differently_measured_TEs：lasTEq与Telescope两种工具定量结果差异显著的转座因子数据集