Toy dataset for metaGEM documentation (Gut v1)
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https://zenodo.org/record/3534948
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资源简介：
This dataset was generated to test and benchmark the metaGEM workflow.
The 100 bp illumina WGS reads consist of ~10% subsets of 3 paired end sets of reads from the following publication:
Karlsson, Fredrik H., et al. “Gut Metagenome in European Women with Normal, Impaired and Diabetic Glucose Control.” Nature, vol.498,no.7452,2013,pp.99–103., doi:10.1038/nature12198.
SRA Accession code ERP002469.
The subsets were generated using the command line tool seqtk:
seqtk sample -s100 sample_X.fastq.gz 3000000 > subset_X.fastq.gz
The sample names in the original publication used to generate the toy dataset are ERR260162 (sample1), ERR260173 (sample2), ERR260184 (sample3).
创建时间：
2021-01-05
