Sequences of mitochondrial contigs for Adineta vaga individuals L1-L11
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Sequences of mitochondrial contigs for <i>A. vaga </i>individuals L1-L11 extracted from whole-genome assemblies using the mitochondrial contig from the first published <i>A. vaga</i> genome assembly (Flot et al., 2013) as the query for blastn search. For L1, mitochondrial contigs were extracted from the MiSeq-based L1 diploid assembly (N50=22,073 bp). For individuals L2-L11, highly fragmented assemblies (with N50 in the range ~1,600-4,300 bp) were generated with SPAdes (version 3.6.0) from HiSeq reads. Mitochondrial sequences for each individual, L1-L11, are in separate FASTA files.
以首个已发表的*A. vaga*基因组组装结果(Flot等,2013年)中的线粒体重叠群作为blastn搜索的查询序列,从全基因组组装数据中提取获得个体L1至L11的线粒体重叠群序列。其中个体L1的线粒体重叠群源自依托MiSeq测序平台构建的L1二倍体基因组组装结果(N50=22073 bp);个体L2至L11的高度碎片化基因组组装结果(N50范围约为1600~4300 bp)则通过SPAdes(版本3.6.0)对HiSeq测序读段进行组装得到。L1至L11每个个体的线粒体序列均存储于独立的FASTA格式文件中。
提供机构:
figshare
创建时间:
2020-03-19



