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Heightened among-individual variation in life history but not morphology is related to developmental temperature in reptiles

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DataCite Commons2021-09-17 更新2024-07-28 收录
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https://figshare.com/articles/dataset/Heightened_among-individual_variation_in_life_history_but_not_morphology_is_related_to_developmental_temperature_in_reptiles/4487759
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Datasets and code to reproduce meta-analysis for: "Heightened among-individual variation in life history but not morphology is related to developmental temperature in reptiles". The datasets are broken up into five trait-based datasets that were extracted from the Reptile Development Database (https://repdevo.com):<br>devdatReorg_sub.csv = Growth <br>perfdatReorg_sub.csv = Performace<br>sizedatReorg_sub_updated.csv = Morphology<br>taildat.csv = Tail length<br>survdatReorg_sub.csv = Survival<br><br>Descriptions of the data columns can be found at https://repdevo.com. We added the following columns:"pairgrp" = rows with the same number share animals are non-independent "collapse" = A numerical indicator (e.g., 1, 2,3) indicating which effects to average. Rows with the same numbers are averaged.<br>The code used for analysis is also provided:<br>analyses_CleanedAMS_lnCV_ls_18April.R<br>Given Bayesian models can take some time to run. We have also provided the survival models:<br>BayesianMCMCglmm_Surv_model_zTrans - z-transfomed to improve mixing and convergence<br><br>

本数据集与代码用于复现题为‘爬行动物生活史的个体间变异升高而非形态学变异与发育温度相关’的元分析(meta-analysis)。本次研究使用的数据集共分为5个按性状分类的数据集,均提取自爬行动物发育数据库(Reptile Development Database,https://repdevo.com),各数据集对应如下: - `devdatReorg_sub.csv`:生长性状 - `perfdatReorg_sub.csv`:性能性状 - `sizedatReorg_sub_updated.csv`:形态学性状 - `taildat.csv`:尾长 - `survdatReorg_sub.csv`:存活性状 数据列的详细说明可参见 https://repdevo.com。本次研究新增了以下数据列: - `pairgrp`:数值相同的行代表来自同一组的非独立动物 - `collapse`:数值型标识(例如1、2、3),用于指示需进行平均的效应组别,数值相同的行将被合并计算平均值 本次研究还提供了分析所用的R代码:`analyses_CleanedAMS_lnCV_ls_18April.R`。鉴于贝叶斯模型运行耗时较长,本次同时提供了存活性状分析所用的贝叶斯模型:`BayesianMCMCglmm_Surv_model_zTrans`——该模型经过z变换以提升MCMC链的混合性与模型收敛性。
提供机构:
figshare
创建时间:
2021-09-07
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