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SSR and SNP markers discovered for Atlantic mackerel

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DataONE2015-08-17 更新2024-06-27 收录
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SSRs: The 1,624 SSR markers detected in the Atlantic mackerel transcriptome. SSR names follow the format Ssco_[A]-[B] where [A] indicates the transcriptome contig where the SSR was detected and [B] indicates the number of SSR in the contig. SNPs:. The 80 validated SNPs sequences and their descriptive statistics. For each marker following information is provided: NCBI Submitter SNP (ss) accession numbers, reference and alternative alleles, call rate (%), minor allele frequency (MAF), global (pooling the three sampling locations) expected heterozygosity (He), global and per location deviation (p-value) from the Hardy-Weinberg equilibrium (HWE), and flanking sequence. SNP names follow the format [A]_[B] where [A] indicates the contig number and [B] indicates the SNP position in that contig. Target SNP is encoded in the sequence as [REF/ALT] where REF indicates the reference allele ALT indicates the alternative allele. * corresponds to p-value < 0.0001. SIGN. means that at least 1 location is not in HWE for these markers. N.S. corresponds to not significant.

简单序列重复(SSR)标记:本数据集涵盖1624个于大西洋鲭鱼转录组中检测得到的SSR标记。SSR标记的命名格式为"Ssco_[A]-[B]",其中"[A]"代表检测到该SSR的转录组重叠群编号,"[B]"代表该重叠群内的SSR序号。 单核苷酸多态性(SNP)标记:本数据集包含80个经过验证的SNP序列及其描述性统计参数。每个SNP标记包含以下信息:NCBI提交者SNP(ss)登录号、参考等位基因与替代等位基因、分型成功率(%)、最小等位基因频率(MAF)、基于三个采样地点合并数据的全局期望杂合度(He)、全局及各采样地点的哈迪-温伯格平衡(HWE)偏离检验p值,以及侧翼序列。 SNP标记的命名格式为"[A]_[B]",其中"[A]"代表重叠群编号,"[B]"代表该重叠群内的SNP位点位置。序列中的目标SNP以"[REF/ALT]"格式编码,其中"REF"代表参考等位基因,"ALT"代表替代等位基因。 符号"*"代表p值<0.0001;"SIGN."表示该标记至少在一个采样地点不符合哈迪-温伯格平衡;"N.S."代表差异不显著。
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2015-08-17
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