PacBio CCS reads from Quandt et al. "Evaluating the diversity of the enigmatic fungal phylum Cryptomycota across habitats using 18S rRNA metabarcoding"

Name: PacBio CCS reads from Quandt et al. "Evaluating the diversity of the enigmatic fungal phylum Cryptomycota across habitats using 18S rRNA metabarcoding"
Creator: figshare
Published: 2022-11-13 15:04:06
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DataCite Commons2022-11-13 更新2024-07-29 收录

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This file is a collection of circular consensus sequences from 16 PacBio runs. There are 80 samples with barcodes. The list of barcodes and samples for each run is as follows: <strong>ID,Barcode,Run #</strong> 0175G,ACAGTCTATACTGCTG,965 0196G,ACACGCATGACACACT,967 0224G,TACTAGAGTAGCACTC,964 0238G,TAGATGCGAGAGTAGA,963 0239G,ATAGAGACTCAGAGCT,965 0242G,TGTGTATCAGTACATG,967 0255G,GCGCACGCACTACAGA,967 0266D,GATCTCTACTATATGC,965 0267D,ATGATGTGCTACATCT,963 0269D,TACTAGAGTAGCACTC,966 0270G,ACACGCATGACACACT,964 0271G,ATAGAGACTCAGAGCT,964 0273G,CTGCGTGCTCTACGAC,967 0274G,ACACGCATGACACACT,963 0275D,GATCTCTACTATATGC,964 0276N,TAGATGCGAGAGTAGA,966 0277D,GCGCACGCACTACAGA,963 0278N,GATCTCTACTATATGC,967 0279D,CGTCTATATACGTATA,965 0280N,CGTCTATATACGTATA,966 0281D,TAGATGCGAGAGTAGA,965 0283D2,TAGATGCGAGAGTAGA,964 0284N2,TGTGTATCAGTACATG,963 0285G2,CTATACATGACTCTGC,965 0286G,ATGATGTGCTACATCT,966 0290D,GCGCGATACGATGACT,966 0292D2,TGTGTATCAGTACATG,966 0293N,TGTGTATCAGTACATG,964 0294D,CTATACATGACTCTGC,964 0296D,ACAGTCTATACTGCTG,963 0298D,CTGCGTGCTCTACGAC,965 0301D,TACTAGAGTAGCACTC,965 0302G,CTATACATGACTCTGC,966 0303P,TACTAGAGTAGCACTC,963 0304P,TGTGTATCAGTACATG,965 0305N,ATAGAGACTCAGAGCT,967 0306D,CGCGCTCAGCTGATCG,967 0309N,ACACGCATGACACACT,965 0314N,ACAGTCTATACTGCTG,964 0315N,ATGATGTGCTACATCT,967 0316G,ACAGTCTATACTGCTG,966 0317N,CTGCGTGCTCTACGAC,964 0318P,GCGCGATACGATGACT,967 0320D,CGCGCTCAGCTGATCG,963 0321P,CTGCGTGCTCTACGAC,966 0322G,CGCGCTCAGCTGATCG,966 0323G,GCGCACGCACTACAGA,1256 0324G,CGCGCTCAGCTGATCG,1256 0324Q,CGTCTATATACGTATA,1256 0324S,ATAGAGACTCAGAGCT,1255 0325S,ATGATGTGCTACATCT,1255 0326G,ACACGCATGACACACT,1255 0330S,TACTAGAGTAGCACTC,1256 0334U,GATCTCTACTATATGC,1255 0335T,ACAGTCTATACTGCTG,1255 0336U,GATCTCTACTATATGC,1256 0338V,CTATACATGACTCTGC,1256 0339V,TGTGTATCAGTACATG,1255 0343X,CTGCGTGCTCTACGAC,1256 0344S0,ACACGCATGACACACT,1256 0344S1,CTGCGTGCTCTACGAC,966 69M,ACACGCATGACACACT,1256 69S,GATCTCTACTATATGC,1256 Fj,ATGATGTGCTACATCT,1256 I3,CTGCGTGCTCTACGAC,1255 KLL1,ACCTCA,84 KLL2,AGAAGT,84 KLL3,CTAGAA,84 KLL4,CACATA,84 KLL5,CGGTGT,84 KLL6,GATAAG,84 KLL7,GGATGC,84 MA119,CGCGCTCAGCTGATCG,554 MA120,GCGCACGCACTACAGA,554 MA121,ACACTGACGTCGCGAC,556 MA135,CGCGCTCAGCTGATCG,555 MA138,CGTCTATATACGTATA,552 MA139,ATAGAGACTCAGAGCT,553 MA140,TAGATGCGAGAGTAGA,551 MA58,GCGCGATACGATGACT,554

本文件收录了16次PacBio（Pacific Biosciences）测序运行所获得的环状一致序列（circular consensus sequences）。本数据集共包含80个带有测序标签（barcode）的样本。各测序运行对应的样本与测序标签列表如下：<strong>样本ID、测序标签、测序运行编号</strong> 0175G,ACAGTCTATACTGCTG,965 0196G,ACACGCATGACACACT,967 0224G,TACTAGAGTAGCACTC,964 0238G,TAGATGCGAGAGTAGA,963 0239G,ATAGAGACTCAGAGCT,965 0242G,TGTGTATCAGTACATG,967 0255G,GCGCACGCACTACAGA,967 0266D,GATCTCTACTATATGC,965 0267D,ATGATGTGCTACATCT,963 0269D,TACTAGAGTAGCACTC,966 0270G,ACACGCATGACACACT,964 0271G,ATAGAGACTCAGAGCT,964 0273G,CTGCGTGCTCTACGAC,967 0274G,ACACGCATGACACACT,963 0275D,GATCTCTACTATATGC,964 0276N,TAGATGCGAGAGTAGA,966 0277D,GCGCACGCACTACAGA,963 0278N,GATCTCTACTATATGC,967 0279D,CGTCTATATACGTATA,965 0280N,CGTCTATATACGTATA,966 0281D,TAGATGCGAGAGTAGA,965 0283D2,TAGATGCGAGAGTAGA,964 0284N2,TGTGTATCAGTACATG,963 0285G2,CTATACATGACTCTGC,965 0286G,ATGATGTGCTACATCT,966 0290D,GCGCGATACGATGACT,966 0292D2,TGTGTATCAGTACATG,966 0293N,TGTGTATCAGTACATG,964 0294D,CTATACATGACTCTGC,964 0296D,ACAGTCTATACTGCTG,963 0298D,CTGCGTGCTCTACGAC,965 0301D,TACTAGAGTAGCACTC,965 0302G,CTATACATGACTCTGC,966 0303P,TACTAGAGTAGCACTC,963 0304P,TGTGTATCAGTACATG,965 0305N,ATAGAGACTCAGAGCT,967 0306D,CGCGCTCAGCTGATCG,967 0309N,ACACGCATGACACACT,965 0314N,ACAGTCTATACTGCTG,964 0315N,ATGATGTGCTACATCT,967 0316G,ACAGTCTATACTGCTG,966 0317N,CTGCGTGCTCTACGAC,964 0318P,GCGCGATACGATGACT,967 0320D,CGCGCTCAGCTGATCG,963 0321P,CTGCGTGCTCTACGAC,966 0322G,CGCGCTCAGCTGATCG,966 0323G,GCGCACGCACTACAGA,1256 0324G,CGCGCTCAGCTGATCG,1256 0324Q,CGTCTATATACGTATA,1256 0324S,ATAGAGACTCAGAGCT,1255 0325S,ATGATGTGCTACATCT,1255 0326G,ACACGCATGACACACT,1255 0330S,TACTAGAGTAGCACTC,1256 0334U,GATCTCTACTATATGC,1255 0335T,ACAGTCTATACTGCTG,1255 0336U,GATCTCTACTATATGC,1256 0338V,CTATACATGACTCTGC,1256 0339V,TGTGTATCAGTACATG,1255 0343X,CTGCGTGCTCTACGAC,1256 0344S0,ACACGCATGACACACT,1256 0344S1,CTGCGTGCTCTACGAC,966 69M,ACACGCATGACACACT,1256 69S,GATCTCTACTATATGC,1256 Fj,ATGATGTGCTACATCT,1256 I3,CTGCGTGCTCTACGAC,1255 KLL1,ACCTCA,84 KLL2,AGAAGT,84 KLL3,CTAGAA,84 KLL4,CACATA,84 KLL5,CGGTGT,84 KLL6,GATAAG,84 KLL7,GGATGC,84 MA119,CGCGCTCAGCTGATCG,554 MA120,GCGCACGCACTACAGA,554 MA121,ACACTGACGTCGCGAC,556 MA135,CGCGCTCAGCTGATCG,555 MA138,CGTCTATATACGTATA,552 MA139,ATAGAGACTCAGAGCT,553 MA140,TAGATGCGAGAGTAGA,551 MA58,GCGCGATACGATGACT,554

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创建时间：

2022-11-13