Unpaired analysis of proteins showing differential expression between baseline and week 8 in n = 39 TB patients.

A total of 60 proteins were differentially expressed using the KS test and 0.01% false discovery rate (q −4; for all 116 proteins with q −3 see Table S4). The shift in expression is shown as the signed KS-distance, with a positive KS value indicating up-regulation of the protein after 8 weeks of TB therapy. Also shown are the raw p-value and resulting FDR corrected “q-value”.*Swiss Prot is a large protein sequence database widely used for protein resources.