Additional file 6: of DGCA: A comprehensive R package for Differential Gene Correlation Analysis

Differential expression output from the PTEN mutation study. The results of differential expression (using the R package limma) on the input breast cancer RNA-seq data filtered for genes in the PTEN-pathway. Note that the contrast called in limma used PTEN wildtype samples as the reference condition, so positive logFC values are upregulated in the mutant condition compared to wildtype, while negative logFC values are downregulated in the mutant condition compared to wildtype. (TSV 7Â kb)