Additional file 1: of Signatures of host specialization and a recent transposable element burst in the dynamic one-speed genome of the fungal barley powdery mildew pathogen

Table S1. BUSCO genome completeness analysis. Table S2. Scaffolds with telomeric repeats at their ends in the DH14 and RACE1 assembly. Table S3. Assosiation table for old and new Bgh gene model IDs. Table S4. Manually currated orthology relationships between RACE1 and DH14. Table S5. Isolate-specific genes in DH14 and RACE1. Table S6. Isolate-specific gene expression in DH14 and RACE1. Table S7. Clustering of secreted protein coding genes in the Bgh DH14 genome. Table S8. MCScanX analysis for the identification of duplicate genes. Table S9. Functional domains of dispersed duplicate genes in Sclerotinia sclerotiorum. Table S10. Secreted/Non-secreted duplications in the Bgh DH14 genome. Table S12. Raw read count for the top 20 expressing transposable elements in pooled 16Â h & 48Â h dpi DH14 RNA-seq dataset. Table S13. All datasets used for analyses in this study. Table S14. BUSCO analysis for the forma specialis genomes used for orthology calling between the CSEPs. (XLSX 1151Â kb)

附表S1. 通用单拷贝直系同源基因集（BUSCO）基因组完整度分析
附表S2. DH14与RACE1基因组组装版本中末端携带端粒重复序列的基因组支架
附表S3. 大麦白粉菌（Blumeria graminis f. sp. hordei, Bgh）新旧基因模型ID的关联表
附表S4. 经人工手动校正的RACE1与DH14间的直系同源关系表
附表S5. DH14与RACE1中的菌株特异性基因集
附表S6. DH14与RACE1的菌株特异性基因表达谱
附表S7. Bgh DH14基因组中分泌蛋白编码基因的聚类分析结果
附表S8. 用于鉴定重复基因的MCScanX共线性分析结果
附表S9. 核盘菌（Sclerotinia sclerotiorum）中散在重复基因的功能结构域信息
附表S10. Bgh DH14基因组中分泌型/非分泌型重复基因相关数据
附表S12. 混合接种后16小时与48小时的DH14 RNA测序（RNA-seq）数据集内，表达量排名前20的转座因子的原始读段计数
附表S13. 本研究所有用于分析的数据集汇总表
附表S14. 用于候选分泌效应蛋白（CSEPs）间直系同源性预测的专化型基因组的BUSCO分析结果
（XLSX格式，文件大小1151千字节）