MEANtools is a computational pipeline that integrates multi-omics data to identify metabolites and predict biosynthetic pathways

MEANtools is a computational pipeline that integrates multi-omics data to identify metabolites and predict biosynthetic pathways https://www.biorxiv.org/content/10.1101/2024.12.22.629970v1 This repository contains data for the meantools repository https://github.com/kumarsaurabh20/meantools Data: Lotus database in SQLite format RetroRules formatted data (loose, medium, and strict datasets) EC-pfam IDs map RNA-seq expression matrix (normalized) from Jeon et al. 2020 Jeon_bacterial.sqlite (output of gene-metabolite correlations, calculated edge-scores and functional clusters for Bacterial samples) Jeon_Fungal.sqlite (output of gene-metabolite correlations, calculated edge-scores and functional clusters for Fungal samples)