Growth analysis of Apilactobacillus kunkeei strains

Growth analysis of <em>Apilactobacillus kunkeei</em> strains used for manuscript "Dyrhage et al. Genome Evolution of a Symbiont Population for Pathogen Defence in Honeybees, Genome Biology and Evolution, 2022."
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The dataset contains the raw data from the Bioscreen C instrument, the column names and the RMarkdown scripts for analysis of the individual growth experiments. A summary file (EXP-20-BQ4058_growthanalysis.summary.Rmd) merges the results from the individual experiments to produce the final summary of growth kinetics for all the tested strains.
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*<em>growthanalysis.csv</em>: raw growthdata from Bioscreen C
*<em>growthanalysis.colnames.csv</em>: sample IDs used in the corresponding *<em>Akunkeei.Rmd </em>scripts to associate plate position with the sample.
*<em>Akunkeei.Rmd</em>:<em> </em>RMarkdown script to analyze the growthdata using the growthcurver package
<em>EXP-20-BQ4058_growthanalysis.summary.Rmd</em>: RMarkdown script to combine the collected growthdata and to generate the results that are part of "Dyrhage et al. Genome Evolution of a Symbiont Population for Pathogen Defence in Honeybees, Genome Biology and Evolution, 2022."

本数据集对应论文《Dyrhage 等：蜜蜂病原菌防御共生种群的基因组进化》（发表于*Genome Biology and Evolution*，2022年）中所使用的库氏蜂乳杆菌（Apilactobacillus kunkeei）菌株的生长分析工作。
本数据集包含Bioscreen C微生物生长曲线分析仪的原始检测数据、列名文件，以及用于单批次生长实验分析的RMarkdown脚本。汇总文件EXP-20-BQ4058_growthanalysis.summary.Rmd可整合各单批次实验的结果，最终生成所有待测菌株的生长动力学汇总报告。
*growthanalysis.csv*：Bioscreen C仪器产出的原始生长数据
*growthanalysis.colnames.csv*：对应Akunkeei.Rmd脚本中使用的样本ID，用于关联培养板孔位与样本信息
*Akunkeei.Rmd*：使用growthcurver包分析生长数据的RMarkdown脚本
*EXP-20-BQ4058_growthanalysis.summary.Rmd*：用于整合已收集的生长数据并生成对应论文结果的RMarkdown脚本，该论文即《Dyrhage 等：蜜蜂病原菌防御共生种群的基因组进化》（*Genome Biology and Evolution*，2022年）