Additional file 2 of Epigenomic analysis reveals a dynamic and context-specific macrophage enhancer landscape associated with innate immune activation and tolerance

Additional file 2: Table S1. Context-specific macrophage epigenetic states and eQTLs (related to Figs. 1 and 2). Table S2. Enhancer RNAs identified in MDMs (related to Fig. 3). Table S3. Enrichment of functional annotations in GWAS signals using stratified LD score regression (related to Fig. 4). Table S4. Immune GWAS risk SNPs within differential macrophage enhancers linking differentially expressed genes (related to Fig. 4). Table S5. Pi ratings for immune disease risk genes in macrophages (related to Fig. 5); Table S6: 164,381 ATAC consensus peaks in CD4/CD8/CD14/CD19/MDMs/iPSMs cells (related to Fig. 6). Table S7. Differential MDM ATACs upon HD vs. UT and/or LDHD vs. HD, and their status in iPSMs (related to Fig. S6). Table S8. Oligos sequences used in this study (related to Fig. 7, S7 and S9).