Additional file 8 of Chromosome-level genome assemblies and genetic maps reveal heterochiasmy and macrosynteny in endangered Atlantic Acropora
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Additional file 8: Supplementary Table 8: Outlier genes between Acropora palmata and A. cervicornis in terms of sequence identity. Percent identity was calculated using rustybam [140] in windows corresponding with gene coordinates using whole genome PAF alignments derived from minimap2 [92]. Genes were considered outliers if their percent identity was below Q1 – (3*IQR).
附加文件8:补充表8:序列一致性维度下掌状轴孔珊瑚(Acropora palmata)与细枝轴孔珊瑚(A. cervicornis)的离群基因。序列一致性百分比的计算方式为:基于minimap2[92]生成的全基因组PAF比对文件,在与基因坐标对应的比对窗口中,借助rustybam工具[140]完成计算。若基因的序列一致性百分比低于Q1 - 3×IQR,则将其判定为离群基因。
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figshare
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2024-11-21



