Microclimate and vectorial capacity for dengue transmission in Athens, GA

These data were used to generate the figures for <br>Wimberly, M. C., J. K. Davis, M. V. Evans, A. Hess, P. M. Newberry, N. Solano-Asamoah, and C. C. Murdock (In Press) Land cover affects microclimate and temperature suitability for arbovirus transmission in an urban landscape, <i>PLoS Neglected Tropical Diseases</i>. <br>Details of the individual files in the archive are provided below:<br>tempmaxstack.tif<br>Predicted maximum daily temperatures in degrees C. The image contains 118 bands, each representing one day from June 15, 2018 through October 10, 2018. <br>tempminstack.tif<br>Predicted minimum daily temperatures in degrees C. The image contains 118 bands, each representing one day from June 15, 2018 through October 10, 2018. <br>vcstack_1.tif, vcstack_2.tif, vcstack_3.tif, vcstack_4.tif<br>Monthly estimates of mosquito life history traits and vectorial capacity: 1) June-July, 2) July-August, 3) August-September, 4) September-October.Each image has 13 bands:<br>1: biting rate (a)2: eggs per female per day (EFD)3: egg-to-adult survival (pEA)4: mosquito development rate (MDR)5: longevity (lf)6: transmission probability (b)7: infection probability (c)8: extrinsic incubation period (EIR)9: mortality rate (mu)10: mosquito abundance (mechanistic estimate)11: mosquito abundance (empirical estimate)12: vectorial capacity (based on mechanistic estimate of mosquito abundance)13: vectorial capacity (based on empirical estimate of mosquito abundance)<br>imperv30.tif<br>Impervious surface cover estimated using 2018 Sentinel-2 imagery. The image has a single band. Values are in percent cover (0-100).<br>treecov30.tif<br>Tree cover estimated using 2018 Sentinel-2 imagery. The image has a single band. Values are in percent cover (0-100).<br>ndwi.tif<br>Normalized difference water index estimated using green and near-infrared bands from 2018 Sentinel-2 imagery. The image has a single band. Values are dimensionless indices that can be thresholded to identify water bodies.<br>micro_2018_daily_data.csv<br>Daily summaries of 2018 microclimate data recorded using field data loggers. The table contains the following fields:<br>Date: Date of microclimate recordSite: Side codenum_temp: Number of temperature observationsnum_rh: Number of humidity observationsmean_temp: Mean temperature (degrees C)min_temp: Minimum temperature (degrees C)max_temp: Maximum temperature (degrees C)mean_rh: Mean relative humidity (%)min_rh: Minimum relative humidity (%)max_rh: Maximum relative humidity (%)<br>logger-site-daily.csv<br>Daily microclimate summaries from 2016-2017. The table contains the following fields:<br>day: Date of microclimate recordSite: Site codeTemp_mean: Mean temperature (degrees C)RH_mean: Mean relative humidity (%)Temp_min: Minimum temperature (degrees C)RH_min: Minimum relative humidity (%)Temp_max: Maximum temperature (degrees C)RH_max: Maximum relative humidity (%)<br>albo-abundance.csv<br>Mosquito trapping data from 2016-2017. The table contains the following fields:<br>Site: Site codeDate: Trapping dateSpecies: Mosquito speciesSex: Mosquito sexcount: Number of mosquitoes trappedclass: Type of site (Rural, Suburban, or Urban)week.no: Number of weeks since the start of the field study<br>

本数据集用于生成以下论文的配图：Wimberly, M. C.、J. K. Davis、M. V. Evans、A. Hess、P. M. Newberry、N. Solano-Asamoah 及 C. C. Murdock（已录用）《城市景观中土地覆盖对微气候及虫媒病毒传播温度适宜性的影响》，发表于*PLOS被忽视的热带病（PLoS Neglected Tropical Diseases）*。
本归档文件中各单个数据集的详细信息如下：
tempmaxstack.tif
预测日最高气温（单位：摄氏度）。该影像包含118个波段，分别对应2018年6月15日至2018年10月10日的每日数据。
tempminstack.tif
预测日最低气温（单位：摄氏度）。该影像包含118个波段，分别对应2018年6月15日至2018年10月10日的每日数据。
vcstack_1.tif, vcstack_2.tif, vcstack_3.tif, vcstack_4.tif
蚊子生活史特征及媒介能量（vectorial capacity）的月度估算数据：1）6-7月，2）7-8月，3）8-9月，4）9-10月。每个影像包含13个波段：
1: 叮咬率（a）2: 每雌日产卵量（eggs per female per day, EFD）3: 卵-成虫存活率（egg-to-adult survival, pEA）4: 蚊子发育速率（mosquito development rate, MDR）5: 寿命（longevity, lf）6: 传播概率（transmission probability, b）7: 感染概率（infection probability, c）8: 外潜伏期（extrinsic incubation period, EIR）9: 死亡率（mortality rate, mu）10: 蚊子丰度（机理估算值）11: 蚊子丰度（经验估算值）12: 媒介能量（基于蚊子丰度机理估算值）13: 媒介能量（基于蚊子丰度经验估算值）
imperv30.tif
基于2018年哨兵二号（Sentinel-2）影像估算的不透水面覆盖度。该影像仅包含1个波段，数值为覆盖百分比（0-100）。
treecov30.tif
基于2018年哨兵二号（Sentinel-2）影像估算的林木覆盖度。该影像仅包含1个波段，数值为覆盖百分比（0-100）。
ndwi.tif
归一化差异水体指数（Normalized Difference Water Index, NDWI），基于2018年哨兵二号（Sentinel-2）影像的绿光波段与近红外波段估算得到。该影像仅包含1个波段，数值为无量纲指数，可通过设定阈值识别水体。
micro_2018_daily_data.csv
2018年野外数据记录仪记录的微气候日汇总数据。该表格包含以下字段：
Date: 微气候记录日期Site: 样地代码num_temp: 温度观测次数num_rh: 湿度观测次数mean_temp: 平均气温（单位：摄氏度）min_temp: 最低气温（单位：摄氏度）max_temp: 最高气温（单位：摄氏度）mean_rh: 平均相对湿度（%）min_rh: 最低相对湿度（%）max_rh: 最高相对湿度（%）
logger-site-daily.csv
2016-2017年的微气候日汇总数据。该表格包含以下字段：
day: 微气候记录日期Site: 样地代码Temp_mean: 平均气温（单位：摄氏度）RH_mean: 平均相对湿度（%）Temp_min: 最低气温（单位：摄氏度）RH_min: 最低相对湿度（%）Temp_max: 最高气温（单位：摄氏度）RH_max: 最高相对湿度（%）
albo-abundance.csv
2016-2017年的蚊子诱捕数据。该表格包含以下字段：
Site: 样地代码Date: 诱捕日期Species: 蚊子物种Sex: 蚊子性别count: 诱捕到的蚊子数量class: 样地类型（乡村、郊区或城市）week.no: 野外研究开始以来的周数