PharmaCoNER Silver Standard: Participant predictions in PharmaCoNER shared task

Introduction

Predictions in the test and background set of PharmaCoNER participants.

Zip structure

One directory per PharmaCoNER participant. Within each participant directory, there is one directory per run.

Corpus format description

For subtask 1 annotations are distributed in Brat format. See Brat webpage for more information https://brat.nlplab.org/standoff.html

For subtask-2, codes are associated with each document are given in a TSV file with the following columns: 

articleID code

Resources:

Web

Citation: A. G. Agirre, M. Marimon, A. Intxaurrondo, O. Rabal, M. Villegas, M. Krallinger, Pharmaconer: Pharmacological substances, compounds and proteins named entity recognition track, in: Proceedings of The 5th Workshop on BioNLP Open Shared Tasks, 2019, pp. 1–10.

Gold Standard corpus

Annotation guidelines

PharmaCoNER tagger

All credit to PharmaCoNER participants. 

For further information, please visit https://temu.bsc.es/pharmaconer/ or email us at [e-mail]

Copyright (c) 2018 Secretaría de Estado para el Avance Digital (SEAD)