Additional file 8 of Evolution, expression and functional analysis of cultivated allotetraploid cotton DIR genes

Additional file 8: Table S1. Characteristics of 107 GbDIR proteins. Table S2. Characteristics of 107 GhDIR proteins. Table S3. List of DIR genes used in the phylogenetic tree. Table S4. Ka, Ks and Ka/Ks values calculated for homologous DIR gene pairs in Gossypium barbadense. Table S5. Ka, Ks and Ka/Ks values calculated for homologous DIR gene pairs in Gossypium hirsutum. Table S6. List of DIRs with biochemical and/or physiological functions in literatures. Table S7. List of DIR genes identified in Gossypium arboreum, Gossypium raimondii, Glycine max, Theobroma cacao and Vitis vinifera. Table S8. JASPAR matrices used to identify potential TFBS. Table S9. List of motif occurrences in Gossypium barbadense. Table S10. List of motif occurrences in Gossypium hirsutum. Table S11. FPKM values of DIR genes in response to Verticillium dahliae and water in Gossypium hirsutum cultivar ND601. Table S12. FPKM values of DIR genes in response to Verticillium dahliae and water in six Gossypium hirsutum cultivars. Table S13. RPKM values of DIR genes during cotton fiber development in Gossypium barbadense. Table S14. RPKM values of DIR genes during cotton fiber development in Gossypium hirsutum

附加文件8：表S1。107个GbDIR蛋白的特征信息。表S2。107个GhDIR蛋白的特征信息。表S3。用于构建系统发育树的DIR基因列表。表S4。海岛棉（Gossypium barbadense）同源DIR基因对的非同义替换率（Ka）、同义替换率（Ks）及Ka/Ks比值计算结果。表S5。陆地棉（Gossypium hirsutum）同源DIR基因对的非同义替换率（Ka）、同义替换率（Ks）及Ka/Ks比值计算结果。表S6。文献中报道的具备生化和/或生理功能的DIR蛋白列表。表S7。在亚洲棉（Gossypium arboreum）、雷蒙德氏棉（Gossypium raimondii）、大豆（Glycine max）、可可（Theobroma cacao）及葡萄（Vitis vinifera）中鉴定得到的DIR基因列表。表S8。用于识别潜在转录因子结合位点（Transcription Factor Binding Site, TFBS）的JASPAR矩阵集。表S9。海岛棉中基序出现情况列表。表S10。陆地棉中基序出现情况列表。表S11。陆地棉品种ND601中DIR基因响应大丽轮枝菌（Verticillium dahliae）胁迫与水处理的FPKM值。表S12。6个陆地棉品种中DIR基因响应大丽轮枝菌胁迫与水处理的FPKM值。表S13。海岛棉纤维发育过程中DIR基因的RPKM值。表S14。陆地棉纤维发育过程中DIR基因的RPKM值。