Additional file 1 of Integrated ATAC-seq and mRNA-seq analyses on granulosa cells identify key regulators of follicle selection in chickens

Additional file 1: Table S1. Primer used in this study. Table S2. Alignment statistics of ATAC-seq data to the reference genome. Table S3. Table of peak counts for each sample. Table S4. Alignment statistics of mRNA-seq data to the reference genome. Table S5. Base composition statistics table. Table S6. Statistical summary of genetic testing. Table S7. 146 DEGs specific to Pre-GCs-R. Table S8. 40 DEGs specific to Post-GCs. Table S9. Four-Quadrant Plot showing concordant increases in chromatin accessibility and gene expression. Table S10. Four-Quadrant Plot showing concordant decrease in chromatin accessibility and gene expression. Table S11. KEGG pathway enrichment analysis for parts I–IV of the study.