Phylogenetic analysis of Chinese Enidae: inference from genome-wide analyses and morphological studies on three selected genera
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https://figshare.com/articles/dataset/Phylogenetic_analysis_of_Chinese_Enidae_inference_from_genome-wide_analyses_and_morphological_studies_on_three_selected_genera/25658010
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资源简介:
Shell images and sequence data of RAD-seq, COI, and ITS genes for 3 genera of Enidae. This dataset contains genome-wide SNPs data sequenced by ddRAD-seq, the gene fragments of COI and ITS, and shell images for the three genera of Enidae land snails—<i>Subzebrinus</i>, <i>Pupinidius</i>, and <i>Petraeomastus</i>. The genome-wide data had been preprocessed by pyRAD. The shell images had been preprocessed with black background color. In addition, a self-defined python script for shell image clustering deposited in folder ./src/clustering_shell_images.py.
本数据集涵盖艾纳螺科(Enidae)3个陆生蜗牛属的螺壳图像及RAD-seq、COI与ITS基因序列数据。具体包含通过ddRAD-seq测序获得的全基因组单核苷酸多态性(SNPs)数据、COI与ITS基因片段序列,以及对应3个属——原小卷螺属(Subzebrinus)、Pupinidius属(Pupinidius)、Petraeomastus属(Petraeomastus)——的螺壳图像。其中全基因组数据已通过pyRAD软件完成预处理,所有螺壳图像均已预处理为黑色背景。此外,本数据集附带一段用于螺壳图像聚类的自定义Python脚本,存储于./src/clustering_shell_images.py路径下。
提供机构:
figshare
创建时间:
2024-09-02



