five

P7 Kdr-KO scRNA seq data

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DataCite Commons2025-07-23 更新2025-09-08 收录
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https://figshare.com/articles/dataset/P7_Kdr-KO_scRNA_seq_data/29626994/1
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Lung tissue from four experimental groups Kdr<sup>flox/flox</sup>and Tbx2<sup>icre</sup>Kdr<sup>flox/flox</sup>under maintained in normoxia or exposed to chronic hyperoxia were euthanized at P7. Lung tissue was dissected and snap-frozen in liquid nitrogen. Nuclei were prepared from frozen tissue using a nuclear isolation kit from 10X Genomics (10x Genomics, PN-1000494). For 10X Chromium, 10,000 nuclei were loaded per lane. The libraries were prepared according to manufacturer protocol (10X Genomics) using 3’V3 Kits (10X Genomics, PN-1000269) and were submitted for sequencing via a NovaSeq 6000 flow cell to a depth of 50,000 reads/cell. Raw sequencing data were processed using CellRanger pipeline

本研究取四个实验组的肺组织,涵盖两个基因型(Kdr<sup>flox/flox</sup>与Tbx2<sup>icre</sup>Kdr<sup>flox/flox</sup>),每个基因型分别设置常氧维持与慢性高氧暴露两个处理组,于出生后第7天(P7)对实验动物实施安乐死。解剖分离肺组织后,将其置于液氮中快速速冻。使用10X Genomics公司的细胞核分离试剂盒(货号:10x Genomics, PN-1000494)从冷冻组织中提取细胞核。针对10X Chromium单细胞测序平台,每个泳道上样10,000个细胞核。按照10X Genomics官方操作规程,使用3’V3试剂盒(货号:10X Genomics, PN-1000269)完成文库构建,随后通过NovaSeq 6000测序流通池进行测序,设定测序深度为50,000条读取序列/细胞。原始测序数据通过CellRanger分析流程进行处理。
提供机构:
figshare
创建时间:
2025-07-23
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