Additional file 2 of Megabase-scale presence-absence variation with Tripsacum origin was under selection during maize domestication and adaptation

Additional file 2: Table S1. Summary of representative PAVs in B73 and Mo17 genome studied in this research. Table S2. List of lines used to characterize PAVs in this study. Table S3. Tripsacum-specific LTR-RTs in RegionA. Table S4. Collection of data used to examine the dosage effect of the B73/Mo17 PAVs. Table S5. Number of RegionA genes showing non-additive mode. Table S6. Details of non-additive RegionA genes. Table S7. Enrichment analysis of RegionA genes. Table S8. Geographic information of the landraces used in this study. Table S9. Association between the presence/absence of RegionA and altitude, tested by an F-test. Table S10. A summary of plant samples. Table S11. RegionA-specific oligo FISH probe used in this study. Table S12. Primers used in this study.

附加文件2：表S1。本研究中分析的B73与Mo17基因组内典型存在-缺失变异（Presence-Absence Variation，PAV）的汇总信息。表S2。本研究中用于鉴定PAV的株系列表。表S3。区域A中摩擦禾（Tripsacum）特异性长末端重复序列反转录转座子（Long Terminal Repeat Retrotransposon，LTR-RT）。表S4。用于探究B73/Mo17来源PAV剂量效应的数据集集合。表S5。呈现非加性表达模式的区域A基因数量统计。表S6。非加性表达的区域A基因详细信息。表S7。区域A基因的富集分析结果。表S8。本研究所用地方品种的地理信息。表S9。通过F检验验证的区域A存在/缺失状态与海拔高度之间的关联情况。表S10。植物样本汇总信息。表S11。本研究所用的区域A特异性寡核苷酸荧光原位杂交（Fluorescence In Situ Hybridization，FISH）探针。表S12。本研究所用的引物列表。