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Genomic data of Nanmaohu Park vascular plant specimen, RL0779

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DataCite Commons2025-05-26 更新2025-04-15 收录
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http://gigadb.org/dataset/101842
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We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00001538. Preliminary identification is that it is of the family Apocynaceae. <br>The K-mer distribution of the sequencing predicted the genome size to be 499540000bp. We have generated 78460000000bp of data, which gives a theoretical coverage of 157.1x.

本研究于中国云南瑞丽植物园开展维管植物采样工作。所有采样点均位于经度97.646389°至98.099167°、纬度23.878333°至24.155556°,海拔740米至1200米的区域内。本次共采集维管植物样本1093份,每份样本均取幼叶用于测序,同时制作了凭证标本。所有凭证标本均保存于国家基因库标本馆(Herbarium of China National GeneBank, HCNGB)。<br>其中761份样本的DNA可用于后续测序;剩余332份样本仅完成凭证标本制作,相关植物图像已公开于本数据集。本次测序涵盖的761份样本,隶属于49目、137科,共计689种维管植物。<br>目前研究团队仍在推进所有标本的正式分类鉴定工作,但截至论文发表时,仅极少数样本完成了科级以上阶元的精准鉴定。<br>本数据集包含凭证标本编号为HCNGB:RUILI:HCNGB_00001538的植物的基因组数据与相关图像。经初步分类鉴定,该样本隶属于夹竹桃科(Apocynaceae)。<br>通过对测序数据进行K-mer分布分析,预测该植物基因组大小为499540000碱基对(bp)。本次测序共产生78460000000碱基对的测序数据,理论测序覆盖度达157.1倍(157.1x)。
提供机构:
GigaScience Database
创建时间:
2019-01-24
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