Restriction-modification systems and plasmids

This folder contains supplementary data files for the paper <br> Restriction-modification systems have shaped the evolution and distribution of plasmids across bacteria (2022) Liam P. Shaw, Eduardo P. C. Rocha, R. Craig MacLean. biorxiv doi: 10.1101/2022.12.15.520556v1 For more information on methods used to generate the data please see the paper. This data is linked to the github repository: https://github.com/liampshaw/R-M-and-plasmids An archived release v1.0.0 of this repository is also provided within this directory as R-M-and-plasmids-1.0.0.tar.gz. Furthermore, the software tool rmsFinder developed for this work (available at https://github.com/liampshaw/rmsFinder) is also provided within this directory as rmsFinder-1.0.0.tar.gz <br> As follows: * Clone git repository * Download and move this figshare data into a `data` directory within that repository * Run R scripts in `R-scripts` using `./run_analysis.sh` to re-generate figures and analysis included in paper <br> A guide to the data files is included in README.txt

本文件夹包含论文《限制性修饰系统（Restriction-modification systems）塑造了细菌质粒（plasmids）的演化与分布》（2022）的补充数据文件，作者为Liam P. Shaw、Eduardo P. C. Rocha与R. Craig MacLean，预印本发布于bioRxiv，DOI: 10.1101/2022.12.15.520556v1。

有关生成本数据所用方法的详细信息，请参阅该论文。本数据集关联的GitHub仓库地址为：https://github.com/liampshaw/R-M-and-plasmids。本目录内同时提供了该仓库的归档发行版v1.0.0，文件名为R-M-and-plasmids-1.0.0.tar.gz。此外，本研究开发的软件工具rmsFinder（开源地址：https://github.com/liampshaw/rmsFinder）也已打包为rmsFinder-1.0.0.tar.gz，存放在本目录中。

数据复现流程如下：
1. 克隆该GitHub仓库
2. 下载本Figshare数据集，并移动至该仓库内的`data`目录中
3. 通过执行`./run_analysis.sh`脚本运行`R-scripts`目录下的R脚本，即可重新生成论文中包含的图表与分析结果。

本数据集的文件说明详见README.txt文件。