A uniformly processed comparative genomics resource for 792 Bacillus assemblies

This repository provides a uniformly processed comparative-genomics resource comprising 792 current public Bacillus assembly records from seven declared species. The release includes canonical metadata and assembly-quality estimates, functional annotations generated with eggNOG-mapper, KofamScan, dbCAN and antiSMASH, MMseqs2 operational gene-family records, deterministic species-level pangenome projections, figure source data and validation code. The canonical manifest is the sole membership authority for all released data layers. Functional annotations are computational predictions, MMseqs2 groups are operational sequence-similarity clusters, and the pangenome files are deterministic projections of archived analyses rather than de novo inferences. The release is organised into five archives: metadata and quality control; functional annotations; operational gene families; species-level pangenome projections; and code, figures and provenance. Each archive includes a file-level manifest, and repository_file_index.tsv provides archive-level SHA-256 checksums. Data-derived files are released under CC BY 4.0 and code under the MIT License. Third-party source records remain subject to their original terms of use.