List of 4,666 human proteins quantified with a minimum of three valid values in at least one setup of the dual proteome shotgun samples of S. Typhimurium infected human or control HeLa cells by means of data-dependent acquisition (DDA).

Comparisons were analysed by t-testing and significant hits determined using as cut-off values a permutation based false discovery rate (FDR) of 0.01 and 0.001 (100 permutations) and a background variance parameter S0 of 0.1. Table headers are as in S1 Table. (XLSX)