Predicted prophage like regions in bacterial genomes
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https://open.flinders.edu.au/articles/dataset/Predicted_prophage_like_regions_in_bacterial_genomes/22299673/1
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资源简介:
This file contains all the predictions about prophages, whether or not they were finally used.
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This file is 447M and contains the following information in a tab separated text file:
0. GENOMEID - Genbank genome assembly accession
1. Contig - Contig ID in the genome assembly
2. Start - prophage start position
3. Stop - prophage end position
4. Length - length of the prophage ((end-start)+1)
5. #CDS - number of coding sequences in the prophage
6. Decision - Whether the prophage is predicted or kept. See below.
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The decision field has three options: Too short (<5 genes), no genes with homology to any known phage gene, or Kept. The latter means that phispy believes that it is a prophage region.
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本文件包含所有针对前噬菌体(prophage)的预测结果,无论其最终是否被采用。
本文件大小为447M,为制表符分隔的文本文件,包含以下信息:
0. GENOMEID:基因库(GenBank)基因组组装登录号
1. Contig:基因组组装中的重叠群(Contig)ID
2. Start:前噬菌体起始位置
3. Stop:前噬菌体终止位置
4. Length:前噬菌体长度(计算公式为(end-start)+1)
5. #CDS:前噬菌体中的编码序列(CDS)数量
6. Decision:该前噬菌体是否被预测或保留,详见下文。
Decision字段包含三种取值:过短(基因数<5)、无任何与已知噬菌体基因同源的基因,以及Kept(保留)。其中Kept表示PhiSpy认为该区域为前噬菌体区域。
提供机构:
Flinders University
创建时间:
2023-03-19



