PepVeg-Pipeline phytotherapeutic proteome database (22 UniProt reference proteomes)

README — PepVeg-Pipeline phytotherapeutic proteome database db_fitoterapici.tar.gz — 22 UniProt reference proteomes of medicinal plants and medicinal fungi (337,646 proteins). Input to the PepVeg-Pipeline for the SPAFESTWDILK / MDM2 case study. Species (22): Fungi: Pleurotus ostreatus, Cordyceps militaris, Ophiocordyceps sinensis, Grifola frondosa, Ganoderma lucidum, Lentinula edodes, Trametes versicolor Plants: Zingiber officinale, Panax ginseng, Camellia sinensis, Artemisia annua, Olea europaea, Curcuma longa, Glycyrrhiza glabra, Moringa oleifera, Silybum marianum, Centella asiatica, Reynoutria japonica, Astragalus membranaceus, Cinnamomum verum, Crocus sativus, Vanilla planifolia Usage: place in /workspace/ (RunPod) or /content/ (Google Colab), then run PepVeg_Pipeline_v10.ipynb selecting database B. Pipeline code: https://github.com/Kingelanci/PepVeg-PipelineRelated deposit (computational outputs): https://doi.org/10.5281/zenodo.20442427 License: CC BY 4.0