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Functional Annotation for 797 plant ns Lipid Transfer Protein

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DataCite Commons2025-08-11 更新2025-04-09 收录
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https://dataverse.cirad.fr/citation?persistentId=doi:10.18167/DVN1/1O5UAK
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This is the list of all the functional annotations about the 797 nsLTP sequences used for our work "Comprehensive classification of the plant non-specific lipid transfer protein superfamily towards its Sequence – Structure – Function analysis". It might be useful for any studies in sequence-structure-function relationships (this is the largest dataset used in a phylogeny study to date). The information is provided as a csv and an xlsx file organized as follows Column A contains the database ID used for our study. Column B contains the nsLTP Type (if available and as stated by initial authors) together with the organism 5 letters code. Column C: LTP name Column D: UniProt page if it exists (URL) Column E: protein sequence (without propeptide) The annotations are displayed in column G to L with ontology (e‧g.: GO for Gene Ontology) then the term of the ontology and a link to its description, the level of evidence (see guide : http://geneontology.org/docs/guide-go-evidence-codes/), additional information, reference in the literature (author + article DOI) If a second annotation is available, the same kind of information is added in new columns on the right. NB: Sequence number 526, 600 and 693 were removed during the study (redundancy)

本数据集为本研究《植物非特异性脂质转移蛋白超家族的全面分类及其序列-结构-功能分析》所使用的797条非特异性脂质转移蛋白(non-specific lipid transfer protein, nsLTP)序列的全部功能注释列表。该数据集可用于序列-结构-功能关联相关的各类研究——这是目前系统发育研究中使用的规模最大的数据集。相关信息以CSV和XLSX格式提供,表格结构如下:A列包含本研究使用的数据库ID;B列包含nsLTP类型(若可获取且符合原始作者标注)及物种5字母代码;C列:LTP名称;D列:UniProt页面链接(若存在);E列:蛋白质序列(不含前肽)。注释信息位于G至L列,涵盖本体论相关内容,例如基因本体论(Gene Ontology, GO),具体包括本体论术语及其描述链接、证据等级(详见指南:http://geneontology.org/docs/guide-go-evidence-codes/)、补充信息以及文献引用(作者+文章DOI)。若存在第二条注释,则右侧新增列补充同类信息。注:本研究中因冗余问题移除了序列编号526、600与693。
提供机构:
CIRAD Dataverse
创建时间:
2019-07-04
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