Genomic data of Nanmaohu Park vascular plant specimen, RL0760
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http://gigadb.org/dataset/101823
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We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00002239. Preliminary identification is that it is of the family Scutellaria shweliensis. <br>The K-mer distribution of the sequencing predicted the genome size to be 313559000bp. We have generated 63380000000bp of data, which gives a theoretical coverage of 202.1x.
本研究于中国云南省瑞丽植物园开展维管植物样本采集工作。所有样本的采集区域地理坐标为东经97.646389°至98.099167°、北纬23.878333°至24.155556°,海拔范围为740米至1200米(以海平面为高程基准)。本次共采集维管植物样本1093份,每份样本均取幼叶用于测序,同时制作凭证标本。上述凭证标本均保存于国家基因库标本馆(Herbarium of China National GeneBank, HCNGB)。
其中761份样本提取到可用于测序的合格基因组DNA;剩余332份样本仅完成凭证标本制作,相关植株的影像数据已收录于本数据集。本次测序的761份样本涵盖49个目、137个科下的689种维管植物。
目前研究团队仍在对所有标本进行正式分类鉴定,但截至论文发表时,仅极少数标本被鉴定至科以上的分类阶元之外。
本数据集包含凭证编号为HCNGB:RUILI:HCNGB_00002239的植株的基因组测序数据与影像资料。经初步鉴定,该样本为瑞丽黄芩(Scutellaria shweliensis)。
基于测序数据的K-mer分布分析,预测该样本的基因组大小为313559000bp。本次测序共产生63380000000bp的原始数据,理论测序深度达202.1×。
提供机构:
GigaScience Database
创建时间:
2019-01-24



