Distinct evolutionary trajectories in the Escherichia coli pangenome occur within sequence types

Supplementary Material for '<strong>Distinct evolutionary trajectories in the</strong> <em><strong>Escherichia coli</strong></em> <strong>pangenome occur within sequence types</strong>' as published in Microbial Genomics. <br> pangenome_data.zip contains (for each ST): <strong>ST_updated_download.txt</strong> - the download list from Enterobase including accession numbers, Bio Project IDs and sample IDs. <strong>ST_gene_presence_absence_roary.csv</strong> - gene presence/absence matrix output by Panaroo <strong>ST_pan_genome_reference.fa</strong> - linear reference genome output by Panaroo

本材料为发表于《Microbial Genomics》的论文《<strong>大肠杆菌（Escherichia coli）泛基因组内不同进化轨迹仅存在于序列型（Sequence Type，简称ST）中</strong>》的补充材料。<br>压缩包pangenome_data.zip包含针对每个序列型的如下文件：<br>1. <strong>ST_updated_download.txt</strong>：来自Enterobase的下载列表，内含登录号、生物项目（Bio Project）编号与样本编号。<br>2. <strong>ST_gene_presence_absence_roary.csv</strong>：由Panaroo生成的基因存在/缺失矩阵文件。<br>3. <strong>ST_pan_genome_reference.fa</strong>：由Panaroo生成的线性参考基因组文件。