Supplementary datasets for manuscript bioRxiv https://doi.org/10.1101/2022.06.03.494642

<strong>Supplementary Data 1.</strong> Database of reference human messenger RNAs and SARS-CoV-2 genomes used for mapping reads. Raw count matrices. <strong>Supplementary Data 2</strong><strong>.</strong> Expression matrices and transcript levels in uninfected cells. <strong>Supplementary Data 3.</strong> Differential Expressed Gene analysis used in the volcano plots analysis. Datasets and results used in the Gene Ontology analyses. Classification of outliers. <strong>Supplementary Data 4.</strong> Transcriptional profiles for all genes in each cell type. <strong>Supplementary Data 5.</strong> Networks used in the analyses presented in Figs. 5 and 6. <strong>Supplementary Data 6.</strong> Transcriptional analysis of human astrovirus 1 infection in ileum organoids.