D2 - Phylogenetic trees - 28S, 18S, concat28S and 18S, 16S, rbcL & psbA

The files used to create the phylogenies for the Meringosphaera host 18S rDNA, plastid 16S rDNA, plastid rbcL and plastid psbA. <br> For each gene, there are 5 files: 1. A fasta file with the identified SAG copies and references Eukaryote sequences. The name of the file ends with ".fasta" 2. The Mafft alignment file of these sequences, file name ends with ".Mafft-auto.fa" 3. The alignment file after trimming with trimAI, file name ends with "trimAI-gappy.fa" 4. The log file of the IQtree process ("IQtree.log") 5. The resulting IQ tree treefile (".IQtree.tre") <br> For the concatenated 28S and 18S the sequences are in a mase file, and then the tree file is presented. For the 28S alone, the fasta file (extracted from the adove mase file but having applied the relevant mask) is presented alongside the tree file. <br> Also contains the figure (D2.1 Separate phylogenies of the 18S and 28S rDNA sequences.png), which includes its own legend.

本数据集包含用于构建Meringosphaera宿主18S核糖体DNA（18S rDNA）、质体16S核糖体DNA（16S rDNA）、质体rbcL基因以及质体psbA基因系统发育树的相关文件。针对每一个目标基因，均包含5类文件：1. 包含已鉴定的SAG拷贝以及真核生物参考序列的FASTA格式文件，文件名以".fasta"结尾；2. 基于上述序列的Mafft多序列比对文件，文件名以".Mafft-auto.fa"结尾；3. 经trimAI修剪后的比对文件，文件名以"trimAI-gappy.fa"结尾；4. IQtree分析流程的日志文件，命名为"IQtree.log"；5. 最终生成的IQtree系统发育树文件，后缀为".IQtree.tre"。针对28S与18S的串联序列，相关序列存储于MASE格式文件中，并附带对应的系统发育树文件。针对单独的28S基因，将提供从上述MASE文件中提取并应用了相关掩码的FASTA格式文件，同时附带对应的系统发育树文件。本数据集还包含配图"D2.1 18S与28S rDNA序列独立系统发育树.png"，该配图自带图例说明。