COVID-19 Genome Sequence Dataset
收藏aws亚马逊开源数据集2024-03-07 收录
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https://registry.opendata.aws/ncbi-covid-19
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资源简介：
This repository within the ACTIV TRACE initiative houses a comprehensive collection of datasets related to SARS-CoV-2. The processing of SARS-CoV-2 Sequence Read Archive (SRA) files has been optimized to identify genetic variations in viral samples. This information is then presented in the Variant Call Format (VCF). Each VCF file corresponds to the SRA parent-run's accession ID. Additionally, the data is available in the parquet format, making it easier to search and filter using the Amazon Athena Service. The SARS-CoV-2 Variant Calling Pipeline is designed to handle new data every six ho...
本仓库隶属于ACTIV TRACE计划（ACTIV TRACE initiative），收录了与严重急性呼吸综合征冠状病毒2型（SARS-CoV-2）相关的全套数据集。针对SARS-CoV-2的序列读取档案（Sequence Read Archive, SRA）文件的处理流程已得到优化，可用于识别病毒样本中的遗传变异。所得信息将以变异调用格式（Variant Call Format, VCF）进行存储与展示，每个VCF文件均对应SRA父运行批次的登录号。此外，该数据集还提供Parquet格式版本，可借助亚马逊雅典娜服务（Amazon Athena Service）更便捷地开展搜索与筛选操作。本SARS-CoV-2变异调用管道（SARS-CoV-2 Variant Calling Pipeline）可每六小时处理一批新增数据……
