Additional file 1: of Determining antimicrobial susceptibility in Salmonella enterica serovar Typhimurium through whole genome sequencing: a comparison against multiple phenotypic susceptibility testing methods

This file contains four Microsoft Excel Sheets with additional information. Table S1. describes the interpretation criteria, dilution ranges and antimicrobial disk contents used for phenotypic susceptibility testing. Table S2. presents the results of phenotypic susceptibility tests and whole genome sequence genotyping. Classification categories against the broth microdilution reference are also presented for each isolate; True Negative (TN), True Positive (TP), False Negative (FN) and False Positive (FP). Table S3. presents European Read Archive run accession numbers for each sequences isolate. Table S4. presents the frequency of isolates with each reference resistance gene sequence detected or fully assembled by ARIBA. (XLSX 144 kb)