Multi-head CRF classifier for biomedical multi-class Named Entity Recognition on Spanish clinical notes

This contains the merged dataset as described in the work "Multi-head CRF classifier for biomedical multi-class Named Entity Recognition on Spanish clinical notes". This dataset consists of 4 seperate datasets: MedProcNer DisTEMIST PharmaCoNER SympTEMIST The dataset contains two tasks: Task 1: This task is related to multi-class Named Entity Recognition. This dataset contains 5 possible classes: SYMPTOM, PROCEDURE, DISEASE, CHEMICAL and PROTEIN. Task 2: This task is related to Named Entity Linking, where each code corresponds to a code within the SNOMED-CT corpus. The exact corpus used can be obtained here. Further for the MedProcNER, SympTEMIST and DisTEMIST datasets, a gazetteer is provided in the original datasets. For more information on the construction of the dataset, aswell as dataloaders, we refer you to our GitHub repository. Please, cite: @article{jonker2024a, title = {Multi-head {{CRF}} classifier for biomedical multi-class named entity recognition on {{Spanish}} clinical notes}, author = {Jonker, Richard A. A. and Almeida, Tiago and Antunes, Rui and Almeida, Jo{\~a}o R. and Matos, S{\'e}rgio}, year = {2024}, journal = {Database}, publisher = {Oxford University Press} } Jonker, R. A. A., Almeida, T., Antunes, R., Almeida, J. R., & Matos, S. (2024). Multi-head CRF classifier for biomedical multi-class named entity recognition on Spanish clinical notes. (Submitted.) License This work is licensed under a Creative Commons Attribution 4.0 International License.