Filtered VCF file for the population genomic study of Quercus macdougallii, a threatened microendemic oak of Mexico

This record contains a filtered variant call format (VCF) file generated for a population genomic study of Quercus macdougallii, a threatened microendemic oak species from the Sierra Juárez, Oaxaca, Mexico. The VCF file includes 5,426 SNPs obtained from genotyping-by-sequencing (GBS) for 79 adult individuals sampled across natural populations of the species. This dataset was used to perform population genomic analyses described in the associated manuscript, including estimates of genetic diversity, population structure, genetic differentiation, and demographic history. Variant filtering and downstream analyses are described in detail in the manuscript.