Different strokes for different croaks: Using an African reed frog species complex as a model to understand idiosyncratic population requirements for conservation management

Biodiversity is under increasing pressure from environmental change, although the scope and severity of these impacts remain incompletely understood. For many species, a lack of information about population‐specific responses to future environmental change hinders the development of effective conservation strategies. Here, we use an East African reed frog species complex as a model to explore spatial variation in vulnerability to future environmental changes. Our sampling across two threatened biodiversity hotspots spans the entire geographic range of H. mitchelli and H. rubrovermiculatus in Kenya, Tanzania, and Malawi. Using genome‐wide (ddRAD‐seq) data, we evaluate levels of neutral genetic diversity and local adaptations across sampling localities. We then integrate spatial approaches (genomic offset, modeled dispersal barriers, and Species Distribution Models) to predict how populations may respond differently to future environmental changes, such as climate warming and predicted la..., , # Data from: Different strokes for different croaks: Using an African reed frog species complex as a model to understand idiosyncratic population requirements for conservation management

Dataset DOI: [10.5061/dryad.h1893200t](https://doi.org/10.5061/dryad.h1893200t)

## Description of the data and file structure

This DRYAD repository contains the raw genomic, environmental, and spatial data needed to recreate all analyses in the manuscript

### Files and variables

#### File: data.zip

**Description:** When unzipped there are three subdirectories: environmental_spatial_data (containing all shapefiles, raster files and information within csv files for each sample)*, genomic_data* *(containing our H. mitchelli complex SNP datasets in various formats for downstream analyses) and pop*_maps (text files dividing each of the individuals per locality or population cluster).

**Details:**

environmental_spatial_data contains:

* Hyperolius_mitchelli.cpg, Hyperolius_mitchelli.dbf, Hyperolius_mi...,

生物多样性正面临日益加剧的环境变化压力，尽管此类影响的范围与严重程度仍未完全明晰。对于多数物种而言，缺乏关于其种群对未来环境变化的特异性响应的相关信息，阻碍了有效保护策略的制定。本研究以东非芦苇蛙物种复合群为模型，探究其对未来环境变化的脆弱性空间变异。我们在两个受威胁的生物多样性热点区域开展采样，覆盖了肯尼亚、坦桑尼亚和马拉维境内H. mitchelli与H. rubrovermiculatus的整个地理分布范围。本研究利用全基因组双酶切简化基因组测序（ddRAD-seq）数据，评估了各采样点的中性遗传多样性水平与本地适应情况。随后，我们整合多种空间分析方法（基因组偏移(Genomic Offset)、模拟扩散障碍与物种分布模型(Species Distribution Models)），预测不同种群对未来环境变化（如气候变暖及预测的[...]）的响应差异。

# 数据来源：《因蛙制宜：以非洲芦苇蛙物种复合群为模型解析保护管理所需的种群特异性需求》

数据集DOI：[10.5061/dryad.h1893200t](https://doi.org/10.5061/dryad.h1893200t)

## 数据与文件结构说明
本DRYAD仓储包含复现论文中所有分析所需的原始基因组、环境与空间数据。

### 文件与变量
#### 文件：data.zip
**描述**：解压后包含三个子目录：
1. environmental_spatial_data（环境与空间数据）：包含所有矢量图层文件、栅格文件以及各采样点的CSV格式信息；
2. genomic_data（基因组数据）：包含H. mitchelli复合群的SNP数据集，提供多种格式以供下游分析使用；
3. pop_maps（种群映射文件）：包含按采样点或种群集群划分各单个个体的文本文件。

**详细信息**：
environmental_spatial_data 包含：
* Hyperolius_mitchelli.cpg、Hyperolius_mitchelli.dbf、Hyperolius_mi...（原文此处内容截断）